scanpy.datasets.toggleswitch

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scanpy.datasets.toggleswitch#

scanpy.datasets.toggleswitch()[source]#

Simulated toggleswitch.

Deprecated since version 1.13.0.

Data obtained simulating a simple toggleswitch [Gardner et al., 2000]

Simulate via sim().

Return type:

AnnData

Returns:

Annotated data matrix.

Examples

>>> import scanpy as sc
>>> sc.datasets.toggleswitch()
FutureWarning: The function toggleswitch is deprecated and will be removed in the future.
    sc.datasets.toggleswitch()
UserWarning: Observation names are not unique. To make them unique, call `.obs_names_make_unique`.
    ...
AnnData object with n_obs × n_vars = 200 × 2
    uns: 'iroot'
    layers: None (.X)
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