Deprecated functions

Deprecated functions#

pp.subsample

Subsample to a fraction of the number of observations.

pp.recipe_weinreb17

Normalize and filter as of [Weinreb et al., 2017].

tl.louvain

Cluster cells into subgroups [Blondel et al., 2008, Levine et al., 2015, Traag, 2015].

tl.sim

Simulate dynamic gene expression data [Wittmann et al., 2009, Wolf et al., 2018].

pl.sim

Plot results of simulation.

queries.gene_coordinates

Retrieve gene coordinates for specific organism through BioMart.

datasets.toggleswitch

Simulated toggleswitch.

logging.print_versions

Alias for print_header.

read_loom

Read .loom-formatted hdf5 file.

read_visium

Read 10x-Genomics-formatted visum dataset.